Index

A

activate() (in module vmd.animate) add() (in module vmd.label) (in module vmd.material) (in module vmd.vmdmenu) add_callback() (in module vmd.vmdcallbacks) add_macro() (in module vmd.selection) add_volumetric() (in module vmd.molecule) addangle() (in module vmd.topology)

addbond() (in module vmd.topology) adddihedral() (in module vmd.topology) addimproper() (in module vmd.topology) addrep() (in module vmd.molrep) all_macros() (in module vmd.selection) angle() (in module vmd.measure) angles() (in module vmd.topology) angletypes() (in module vmd.topology) atomselect() (in module vmd.vmdnumpy)

B

bond() (in module vmd.measure) bonds (vmd.atomsel attribute)

bonds() (in module vmd.topology) bondtypes() (in module vmd.topology) booleans() (in module vmd.selection)

C

cancel() (in module vmd.molecule) categories() (in module vmd.color) center() (vmd.atomsel method) centerperresidue() (vmd.atomsel method) change() (in module vmd.material) color() (in module vmd.graphics)

cone() (in module vmd.graphics) connect() (in module vmd.imd) connected() (in module vmd.imd) contacts() (vmd.atomsel method) copyunitcell() (in module vmd.imd) cylinder() (in module vmd.graphics)

D

default() (in module vmd.material) del_callback() (in module vmd.vmdcallbacks) del_macro() (in module vmd.selection) delallangles() (in module vmd.topology) delallbonds() (in module vmd.topology) delalldihedrals() (in module vmd.topology) delallimpropers() (in module vmd.topology) delangle() (in module vmd.topology) delbond() (in module vmd.topology) deldihedral() (in module vmd.topology) delete() (in module vmd.graphics) (in module vmd.label) (in module vmd.material) (in module vmd.molecule)

delete_volumetric() (in module vmd.molecule) delframe() (in module vmd.molecule) delimproper() (in module vmd.topology) delrep() (in module vmd.molrep) detach() (in module vmd.imd) dihedral() (in module vmd.measure) dihedrals() (in module vmd.topology) dihedraltypes() (in module vmd.topology) dupframe() (in module vmd.molecule)

E

evaltcl() (in module vmd)

exists() (in module vmd.molecule)

F

fit() (vmd.atomsel method) fix() (in module vmd.trans)

forward() (in module vmd.animate) frame (vmd.atomsel attribute) functions() (in module vmd.selection)

G

get() (in module vmd.display) get_accessions() (in module vmd.molecule) get_autoupdate() (in module vmd.molrep) get_center() (in module vmd.trans) get_color() (in module vmd.molrep) get_colorlist() (in module vmd.color) get_colormap() (in module vmd.color) get_colors() (in module vmd.color) get_colorupdate() (in module vmd.molrep) get_databases() (in module vmd.molecule) get_filenames() (in module vmd.molecule) get_filetypes() (in module vmd.molecule) get_frame() (in module vmd.molecule) get_location() (in module vmd.axes) get_macro() (in module vmd.selection) get_material() (in module vmd.molrep)

get_periodic() (in module vmd.molecule) get_physical_time() (in module vmd.molecule) get_remarks() (in module vmd.molecule) get_repname() (in module vmd.molrep) get_rotation() (in module vmd.trans) get_scale() (in module vmd.trans) get_scaleminmax() (in module vmd.molrep) get_selection() (in module vmd.molrep) get_smoothing() (in module vmd.molrep) get_style() (in module vmd.molrep) get_top() (in module vmd.molecule) get_translation() (in module vmd.trans) get_values() (in module vmd.label) get_visible() (in module vmd.molecule) (in module vmd.molrep) get_volumetric() (in module vmd.molecule) goto() (in module vmd.animate)

H

hbonds() (vmd.atomsel method)

I

impropers() (in module vmd.topology) impropertypes() (in module vmd.topology) info() (in module vmd.graphics)

is_active() (in module vmd.animate) is_fixed() (in module vmd.trans) is_shown() (in module vmd.trans)

K

keep() (in module vmd.imd)

keywords() (in module vmd.selection) kill() (in module vmd.imd)

L

line() (in module vmd.graphics) list_attributes() (vmd.atomsel method) listall() (in module vmd.graphics) (in module vmd.label) (in module vmd.material) (in module vmd.molecule) (in module vmd.render)

load() (in module vmd.molecule) location() (in module vmd.vmdmenu) loop() (in module vmd.animate)

M

material() (in module vmd.graphics) materials() (in module vmd.graphics) minmax() (vmd.atomsel method) mode() (in module vmd.mouse)

modrep() (in module vmd.molrep) molid (vmd.atomsel attribute) move() (vmd.atomsel method) moveby() (vmd.atomsel method)

N

name() (in module vmd.molecule) new() (in module vmd.molecule) next() (in module vmd.animate) num() (in module vmd.molecule) (in module vmd.molrep)

num_volumetric() (in module vmd.molecule) numatoms() (in module vmd.molecule) numframes() (in module vmd.molecule)

O

once() (in module vmd.animate)

P

pause() (in module vmd.animate) (in module vmd.imd)

point() (in module vmd.graphics) positions() (in module vmd.vmdnumpy) prev() (in module vmd.animate)

R

read() (in module vmd.molecule) register() (in module vmd.vmdmenu) rename() (in module vmd.material) (in module vmd.molecule) render() (in module vmd.render) repindex() (in module vmd.molrep) replace() (in module vmd.graphics) reset_scaleminmax() (in module vmd.molrep) resetview() (in module vmd.trans)

reverse() (in module vmd.animate) rgyr() (vmd.atomsel method) rmsd() (vmd.atomsel method) rmsdperresidue() (vmd.atomsel method) rmsdQCP() (vmd.atomsel method) rmsf() (vmd.atomsel method) rmsfperresidue() (vmd.atomsel method) rock() (in module vmd.animate) rotate_scene() (in module vmd.trans)

S

sasa() (vmd.atomsel method) scale_max() (in module vmd.color) scale_method() (in module vmd.color) scale_methods() (in module vmd.color) scale_midpoint() (in module vmd.color) scale_min() (in module vmd.color) scale_scene() (in module vmd.trans) set() (in module vmd.display) set_autoupdate() (in module vmd.molrep) set_center() (in module vmd.trans) set_colorid() (in module vmd.color) set_colormap() (in module vmd.color) set_colors() (in module vmd.color) set_colorupdate() (in module vmd.molrep) set_frame() (in module vmd.molecule) set_location() (in module vmd.axes) set_periodic() (in module vmd.molecule) set_physical_time() (in module vmd.molecule)

set_rotation() (in module vmd.trans) set_scale() (in module vmd.color) set_scaleminmax() (in module vmd.molrep) set_smoothing() (in module vmd.molrep) set_top() (in module vmd.molecule) set_translation() (in module vmd.trans) set_visible() (in module vmd.label) (in module vmd.molecule) (in module vmd.molrep) settings() (in module vmd.material) show() (in module vmd.trans) (in module vmd.vmdmenu) skip() (in module vmd.animate) speed() (in module vmd.animate) sphere() (in module vmd.graphics) ssrecalc() (in module vmd.molecule) stereomodes() (in module vmd.display) stringfunctions() (in module vmd.selection) style() (in module vmd.animate)

T

text() (in module vmd.graphics) text_size() (in module vmd.label) text_thickness() (in module vmd.label) timestep() (in module vmd.vmdnumpy)

transfer() (in module vmd.imd) translate_scene() (in module vmd.trans) triangle() (in module vmd.graphics) trinorm() (in module vmd.graphics)

U

update() (in module vmd.display) (vmd.atomsel method)

update_off() (in module vmd.display) update_on() (in module vmd.display) update_ui() (in module vmd.display)

V

velocities() (in module vmd.vmdnumpy)

W

write() (in module vmd.molecule) (vmd.atomsel method)