vmd.topology.addbond¶
-
vmd.topology.
addbond
()¶ Add a bond between two atoms with given indices. If bond is already present, nothing will be done.
Parameters: - i (int) – Index of first atom
- j (int) – Index of second atom
- molid (int) – Molecule ID to add bond to. Defaults to top molecule.
- order (float) – Bond order. Defaults to 1.0
- type (str) – Bond type. Can be from output of topology.bondtypes(), or can define a new bond type. Defaults to None